Businesses in New York State must pay an annual franchise tax. For S-Corps, this tax is due every year on March 15, the deadline for tax returns.
How much is due can be determined at this link https://www.tax.ny.gov/forms/current-forms/ct/ct3si.htm#fdm-schedule
Read more details and explanations at this link https://www.tax.ny.gov/bus/ct/s_corporations_post.htm
The best way to pay the New York State Franchise Tax is to have your Accountant schedule a Direct Debit payment with your NY Business Tax Return.
Alternatively, you may pay online here https://www.tax.ny.gov/online/createaccount.htm#bus
Or mail paper vouchers which can be provided to you (this is not recommended)
See also How can I set up an IRS Tax Payment Plan?
See also Where can I find copies of my Tax Returns?
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